Commit 29a63e0d authored by Konrad Stawiski's avatar Konrad Stawiski Committed by GitHub
Browse files

final 06.04.2021

parent 8fcee176
Pipeline #104 failed with stages
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......@@ -20,7 +20,7 @@ jobs:
pwd
conda update --all
conda install -c conda-forge mamba
mamba install --channel "conda-forge" --channel "anaconda" --channel "r" conda-pack tensorflow-gpu keras jupyter jupytext numpy pandas r-base r-devtools r-rgl r-cairo r-rjava r-mnormt r-purrrogress r-xml gxx_linux-64 libxml2 pandoc r-rjava r-magick opencv pkgconfig gfortran_linux-64 r-pkgdown
mamba install --channel "conda-forge" --channel "anaconda" --channel "r" conda-pack tensorflow-gpu keras jupyter jupytext numpy pandas r-base r-devtools r-rgl r-cairo r-rjava r-mnormt r-purrrogress r-xml gxx_linux-64 libxml2 pandoc r-rjava r-magick opencv pkgconfig gfortran_linux-64
echo "options(repos=structure(c(CRAN='http://cran.r-project.org')))" >> ~/.Rprofile
Rscript -e 'update.packages(ask = F); install.packages(c("devtools","remotes"));'
Rscript -e 'devtools::source_url("https://raw.githubusercontent.com/kstawiski/OmicSelector/master/vignettes/setup.R")'
......@@ -32,13 +32,6 @@ jobs:
shell: bash -l {0}
run: |
Rscript -e 'library(OmicSelector); sessionInfo();'
- name: Update website
shell: bash -l {0}
run: |
git config --local user.email "actions@github.com"
git config --local user.name "GitHub Actions"
Rscript -e 'install.packages("pkgdown"); pkgdown::deploy_to_branch(new_process = FALSE)'
- name: Pack env
shell: bash -l {0}
......
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