Explore projects

Repository for tutorials, utilities and other fun bioinformatic stuff from JChrzanowski.

Code and data for reproduction of results from Matters Arising: The value of validation – response to: “A microRNA panel compared to environmental and polygenic scores for colorectal cancer risk prediction”

A small-RNA sequencing analysis pipeline

Predict the probability of relapse or reccurence (disease-free survival) after adjuvant or salvage radiation therapy for prostate cancer.

PancreApp: innovative approach to computational individualization of nutritional therapy in chronic gastrointestinal disorders.

Neurexam (Badanie Neurologiczne by Konrad Stawiski) - interactive neurological examination assistant and electronic health record.

OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.

Normalizing tool for microRNA RT-qPCR expression profiling

R package with functions to help in BTM project.